IL_7NHL_140

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7NHL|1|a|A|540, 7NHL|1|a|U|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_140 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.197

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7NHL|1|a|G|523
7NHL|1|a|U|524
7NHL|1|a|G|525
7NHL|1|a|C|526
7NHL|1|a|C|527
7NHL|1|a|A|528
7NHL|1|a|G|529
*
7NHL|1|a|C|536
7NHL|1|a|G|537
7NHL|1|a|G|538
7NHL|1|a|U|539
7NHL|1|a|A|540
7NHL|1|a|A|541
7NHL|1|a|U|542
7NHL|1|a|A|543
7NHL|1|a|C|544

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain e

30S ribosomal protein S4

Chain m

30S ribosomal protein S12