IL_7NHM_111
3D structure
- PDB id
- 7NHM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHM_111 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.143
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NHM|1|B|C|69
7NHM|1|B|G|70
7NHM|1|B|A|71
7NHM|1|B|U|72
7NHM|1|B|G|73
7NHM|1|B|G|74
7NHM|1|B|U|75
7NHM|1|B|A|76
7NHM|1|B|G|77
*
7NHM|1|B|C|94
7NHM|1|B|U|95
7NHM|1|B|A|96
7NHM|1|B|G|97
7NHM|1|B|A|98
7NHM|1|B|G|99
7NHM|1|B|U|100
7NHM|1|B|A|101
7NHM|1|B|G|102
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L16
- Chain Y
- 50S ribosomal protein L25
- Chain Z
- 50S ribosomal protein L27
Coloring options: