IL_7NHN_013

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAC*GAGUGAAACAGUUC

Length

18 nucleotides

Bulged bases

7NHN|1|A|C|549, 7NHN|1|A|U|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_013 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.156

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

7NHN|1|A|G|527
7NHN|1|A|C|528
7NHN|1|A|A|529
7NHN|1|A|C|530
*
7NHN|1|A|G|541
7NHN|1|A|A|542
7NHN|1|A|G|543
7NHN|1|A|U|544
7NHN|1|A|G|545
7NHN|1|A|A|546
7NHN|1|A|A|547
7NHN|1|A|A|548
7NHN|1|A|C|549
7NHN|1|A|A|550
7NHN|1|A|G|551
7NHN|1|A|U|552
7NHN|1|A|U|553
7NHN|1|A|C|554

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain X

50S ribosomal protein L24