IL_7NHN_085

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_085 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2297

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

7NHN|1|A|C|2140
7NHN|1|A|U|2141
7NHN|1|A|U|2142
7NHN|1|A|G|2143
*
7NHN|1|A|C|2212
7NHN|1|A|U|2213
7NHN|1|A|G|2214
7NHN|1|A|G|2215

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein