IL_7NHN_138
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7NHN|1|a|A|542, 7NHN|1|a|U|544, 7NHN|1|a|A|545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHN_138 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1334
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NHN|1|a|G|525
7NHN|1|a|U|526
7NHN|1|a|G|527
7NHN|1|a|C|528
7NHN|1|a|C|529
7NHN|1|a|A|530
7NHN|1|a|G|531
*
7NHN|1|a|C|538
7NHN|1|a|G|539
7NHN|1|a|G|540
7NHN|1|a|U|541
7NHN|1|a|A|542
7NHN|1|a|A|543
7NHN|1|a|U|544
7NHN|1|a|A|545
7NHN|1|a|C|546
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
Coloring options: