IL_7NQH_099

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCAGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQH_099 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.218

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7NQH|1|BA|C|1454
7NQH|1|BA|C|1455
7NQH|1|BA|C|1456
7NQH|1|BA|A|1457
7NQH|1|BA|G|1458
7NQH|1|BA|U|1459
7NQH|1|BA|A|1460
7NQH|1|BA|C|1461
*
7NQH|1|BA|G|1466
7NQH|1|BA|G|1467
7NQH|1|BA|A|1468
7NQH|1|BA|C|1469
7NQH|1|BA|A|1470
7NQH|1|BA|A|1471
7NQH|1|BA|G|1472

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BO

uL14m