IL_7NQL_100

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCAGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQL_100 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2311

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7NQL|1|BA|C|1454
7NQL|1|BA|C|1455
7NQL|1|BA|C|1456
7NQL|1|BA|A|1457
7NQL|1|BA|G|1458
7NQL|1|BA|U|1459
7NQL|1|BA|A|1460
7NQL|1|BA|C|1461
*
7NQL|1|BA|G|1466
7NQL|1|BA|G|1467
7NQL|1|BA|A|1468
7NQL|1|BA|C|1469
7NQL|1|BA|A|1470
7NQL|1|BA|A|1471
7NQL|1|BA|G|1472

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BO

uL14m