IL_7NRC_021
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 7NRC|1|LA|U|534, 7NRC|1|LA|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_021 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.1272
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRC|1|LA|G|531
7NRC|1|LA|A|532
7NRC|1|LA|A|533
7NRC|1|LA|U|534
7NRC|1|LA|G|535
7NRC|1|LA|U|536
7NRC|1|LA|A|537
7NRC|1|LA|G|538
*
7NRC|1|LA|U|553
7NRC|1|LA|A|554
7NRC|1|LA|U|555
7NRC|1|LA|U|556
7NRC|1|LA|A|557
7NRC|1|LA|U|558
7NRC|1|LA|A|559
7NRC|1|LA|G|560
7NRC|1|LA|C|561
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LO
- 60S ribosomal protein L14-A
- Chain LU
- 60S ribosomal protein L20-A
Coloring options: