3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
7NRC|1|LA|U|534, 7NRC|1|LA|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_021 not in the Motif Atlas
Homologous match to IL_5TBW_020
Geometric discrepancy: 0.1272
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7NRC|1|LA|G|531
7NRC|1|LA|A|532
7NRC|1|LA|A|533
7NRC|1|LA|U|534
7NRC|1|LA|G|535
7NRC|1|LA|U|536
7NRC|1|LA|A|537
7NRC|1|LA|G|538
*
7NRC|1|LA|U|553
7NRC|1|LA|A|554
7NRC|1|LA|U|555
7NRC|1|LA|U|556
7NRC|1|LA|A|557
7NRC|1|LA|U|558
7NRC|1|LA|A|559
7NRC|1|LA|G|560
7NRC|1|LA|C|561

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LO
60S ribosomal protein L14-A
Chain LU
60S ribosomal protein L20-A

Coloring options:


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