IL_7NRC_021

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

7NRC|1|LA|U|534, 7NRC|1|LA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1272

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7NRC|1|LA|G|531
7NRC|1|LA|A|532
7NRC|1|LA|A|533
7NRC|1|LA|U|534
7NRC|1|LA|G|535
7NRC|1|LA|U|536
7NRC|1|LA|A|537
7NRC|1|LA|G|538
*
7NRC|1|LA|U|553
7NRC|1|LA|A|554
7NRC|1|LA|U|555
7NRC|1|LA|U|556
7NRC|1|LA|A|557
7NRC|1|LA|U|558
7NRC|1|LA|A|559
7NRC|1|LA|G|560
7NRC|1|LA|C|561

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LO

60S ribosomal protein L14-A

Chain LU

60S ribosomal protein L20-A