IL_7NRC_100
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_100 not in the Motif Atlas
- Geometric match to IL_5TBW_099
- Geometric discrepancy: 0.1522
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
7NRC|1|LA|C|2666
7NRC|1|LA|A|2667
7NRC|1|LA|U|2668
*
7NRC|1|LA|A|2686
7NRC|1|LA|G|2687
7NRC|1|LA|U|2688
7NRC|1|LA|A|2689
7NRC|1|LA|G|2690
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- 60S ribosomal protein L11-B
- Chain LV
- 60S ribosomal protein L21-A
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