IL_7NRC_115
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 7NRC|1|LA|A|3142, 7NRC|1|LA|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_115 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.0861
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7NRC|1|LA|C|3004
7NRC|1|LA|A|3005
7NRC|1|LA|A|3006
7NRC|1|LA|U|3007
*
7NRC|1|LA|A|3139
7NRC|1|LA|G|3140
7NRC|1|LA|A|3141
7NRC|1|LA|A|3142
7NRC|1|LA|C|3143
7NRC|1|LA|G|3144
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LQ
- 60S ribosomal protein L16-A
Coloring options: