IL_7NRC_157

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

7NRC|1|S2|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_157 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1175

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7NRC|1|S2|U|113
7NRC|1|S2|C|114
7NRC|1|S2|G|115
7NRC|1|S2|U|116
*
7NRC|1|S2|A|300
7NRC|1|S2|A|301

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SV

40S ribosomal protein S8-A

Chain SX

40S ribosomal protein S11-A