3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UAUCAA*UUUCAACG
Length
14 nucleotides
Bulged bases
7NRC|1|S2|U|313, 7NRC|1|S2|C|351
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_167 not in the Motif Atlas
Homologous match to IL_4V88_402
Geometric discrepancy: 0.1194
The information below is about IL_4V88_402
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

7NRC|1|S2|U|311
7NRC|1|S2|A|312
7NRC|1|S2|U|313
7NRC|1|S2|C|314
7NRC|1|S2|A|315
7NRC|1|S2|A|316
*
7NRC|1|S2|U|348
7NRC|1|S2|U|349
7NRC|1|S2|U|350
7NRC|1|S2|C|351
7NRC|1|S2|A|352
7NRC|1|S2|A|353
7NRC|1|S2|C|354
7NRC|1|S2|G|355

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SV
40S ribosomal protein S8-A
Chain SX
40S ribosomal protein S11-A
Chain Sc
40S ribosomal protein S23-A

Coloring options:


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