IL_7NRC_180
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7NRC|1|S2|A|579, 7NRC|1|S2|U|581, 7NRC|1|S2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_180 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1666
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NRC|1|S2|G|562
7NRC|1|S2|U|563
7NRC|1|S2|G|564
7NRC|1|S2|C|565
7NRC|1|S2|C|566
7NRC|1|S2|A|567
7NRC|1|S2|G|568
*
7NRC|1|S2|C|575
7NRC|1|S2|G|576
7NRC|1|S2|G|577
7NRC|1|S2|U|578
7NRC|1|S2|A|579
7NRC|1|S2|A|580
7NRC|1|S2|U|581
7NRC|1|S2|U|582
7NRC|1|S2|C|583
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain Sl
- RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3')
- Chain Sm
- Transfer RNA; tRNA
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