3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUUAAAA*UC
Length
9 nucleotides
Bulged bases
7NRC|1|S2|A|619
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_181 not in the Motif Atlas
Homologous match to IL_4V88_416
Geometric discrepancy: 0.1547
The information below is about IL_4V88_416
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.3
Basepair signature
cWW-L-cWW-R-L-R
Number of instances in this motif group
5

Unit IDs

7NRC|1|S2|G|616
7NRC|1|S2|U|617
7NRC|1|S2|U|618
7NRC|1|S2|A|619
7NRC|1|S2|A|620
7NRC|1|S2|A|621
7NRC|1|S2|A|622
*
7NRC|1|S2|U|1104
7NRC|1|S2|C|1105

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain Sc
40S ribosomal protein S23-A
Chain Se
40S ribosomal protein S26-B

Coloring options:


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