IL_7NRC_181

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7NRC|1|S2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_181 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1547

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7NRC|1|S2|G|616
7NRC|1|S2|U|617
7NRC|1|S2|U|618
7NRC|1|S2|A|619
7NRC|1|S2|A|620
7NRC|1|S2|A|621
7NRC|1|S2|A|622
*
7NRC|1|S2|U|1104
7NRC|1|S2|C|1105

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain Sc

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S26-B