3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CACAC*GCGUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_248 not in the Motif Atlas
Homologous match to IL_8P9A_349
Geometric discrepancy: 0.3094
The information below is about IL_8P9A_349
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

7NRC|1|LA|C|3162
7NRC|1|LA|A|3163
7NRC|1|LA|C|3164
7NRC|1|LA|A|3165
7NRC|1|LA|C|3166
*
7NRC|1|LA|G|3284
7NRC|1|LA|C|3285
7NRC|1|LA|G|3286
7NRC|1|LA|U|3287
7NRC|1|LA|G|3288

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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