IL_7NRC_248

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_248 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.3094

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7NRC|1|LA|C|3162
7NRC|1|LA|A|3163
7NRC|1|LA|C|3164
7NRC|1|LA|A|3165
7NRC|1|LA|C|3166
*
7NRC|1|LA|G|3284
7NRC|1|LA|C|3285
7NRC|1|LA|G|3286
7NRC|1|LA|U|3287
7NRC|1|LA|G|3288

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains