IL_7NRC_254
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7NRC|1|S2|C|1274, 7NRC|1|S2|U|1432, 7NRC|1|S2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_254 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1291
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NRC|1|S2|U|1272
7NRC|1|S2|G|1273
7NRC|1|S2|C|1274
7NRC|1|S2|A|1275
7NRC|1|S2|U|1276
7NRC|1|S2|G|1277
7NRC|1|S2|G|1278
*
7NRC|1|S2|U|1430
7NRC|1|S2|C|1431
7NRC|1|S2|U|1432
7NRC|1|S2|G|1433
7NRC|1|S2|U|1434
7NRC|1|S2|G|1435
7NRC|1|S2|A|1436
7NRC|1|S2|U|1437
7NRC|1|S2|G|1438
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain SC
- 40S ribosomal protein S10-A
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain Sl
- RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3')
- Chain Sm
- Transfer RNA; tRNA
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