IL_7NRD_051
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7NRD|1|LA|C|1196, 7NRD|1|LA|A|1302, 7NRD|1|LA|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_051 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1414
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|G|1194
7NRD|1|LA|A|1195
7NRD|1|LA|C|1196
7NRD|1|LA|A|1197
7NRD|1|LA|C|1198
7NRD|1|LA|C|1199
7NRD|1|LA|A|1200
7NRD|1|LA|C|1201
7NRD|1|LA|A|1202
7NRD|1|LA|A|1203
7NRD|1|LA|A|1204
7NRD|1|LA|A|1205
*
7NRD|1|LA|U|1299
7NRD|1|LA|G|1300
7NRD|1|LA|A|1301
7NRD|1|LA|A|1302
7NRD|1|LA|A|1303
7NRD|1|LA|A|1304
7NRD|1|LA|U|1305
7NRD|1|LA|G|1306
7NRD|1|LA|G|1307
7NRD|1|LA|A|1308
7NRD|1|LA|U|1309
7NRD|1|LA|G|1310
7NRD|1|LA|G|1311
7NRD|1|LA|C|1312
7NRD|1|LA|G|1313
7NRD|1|LA|C|1314
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LE
- 60S ribosomal protein L3
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- 60S ribosomal protein L10
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LU
- 60S ribosomal protein L20-A
- Chain Lh
- 60S ribosomal protein L33-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
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