IL_7NRD_055

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7NRD|1|LA|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_055 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.1869

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7NRD|1|LA|G|1262
7NRD|1|LA|A|1263
7NRD|1|LA|G|1264
7NRD|1|LA|U|1265
7NRD|1|LA|G|1266
*
7NRD|1|LA|C|1275
7NRD|1|LA|U|1276
7NRD|1|LA|C|1277

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains