IL_7NRD_056
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 7NRD|1|LA|G|1429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_056 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.2025
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7NRD|1|LA|C|1376
7NRD|1|LA|G|1377
7NRD|1|LA|U|1378
*
7NRD|1|LA|A|1428
7NRD|1|LA|G|1429
7NRD|1|LA|U|1430
7NRD|1|LA|G|1431
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lg
- 60S ribosomal protein L32
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