IL_7NRD_058
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 7NRD|1|LA|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_058 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.1628
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
7NRD|1|LA|U|1388
7NRD|1|LA|G|1389
7NRD|1|LA|A|1390
7NRD|1|LA|C|1391
7NRD|1|LA|G|1392
7NRD|1|LA|A|1393
7NRD|1|LA|A|1394
7NRD|1|LA|G|1395
*
7NRD|1|LA|U|1415
7NRD|1|LA|C|1416
7NRD|1|LA|G|1417
7NRD|1|LA|A|1418
7NRD|1|LA|A|1419
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain LH
- 60S ribosomal protein L6-B
- Chain LR
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Lg
- 60S ribosomal protein L32
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