IL_7NRD_064

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_064 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.1613

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

7NRD|1|LA|G|1618
7NRD|1|LA|A|1619
7NRD|1|LA|U|1620
7NRD|1|LA|A|1621
*
7NRD|1|LA|U|1824
7NRD|1|LA|G|1825
7NRD|1|LA|C|1826

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain Lm

60S ribosomal protein L38