IL_7NRD_065

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

7NRD|1|LA|U|1820, 7NRD|1|LA|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_065 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2029

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

7NRD|1|LA|G|1623
7NRD|1|LA|G|1624
*
7NRD|1|LA|U|1819
7NRD|1|LA|U|1820
7NRD|1|LA|U|1821
7NRD|1|LA|C|1822

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Li

60S ribosomal protein L34-A

Chain Lm

60S ribosomal protein L38