IL_7NRD_071

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

7NRD|1|LA|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_071 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.1365

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7NRD|1|LA|U|1694
7NRD|1|LA|U|1695
7NRD|1|LA|A|1696
7NRD|1|LA|A|1697
7NRD|1|LA|C|1698
*
7NRD|1|LA|G|1747
7NRD|1|LA|G|1748
7NRD|1|LA|A|1749
7NRD|1|LA|A|1750
7NRD|1|LA|G|1751
7NRD|1|LA|A|1752

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Li

60S ribosomal protein L34-A

Chain Lm

60S ribosomal protein L38