IL_7NRD_078
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 7NRD|1|LA|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_078 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1474
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7NRD|1|LA|C|1918
7NRD|1|LA|G|1919
7NRD|1|LA|U|1920
7NRD|1|LA|A|1921
7NRD|1|LA|A|1922
7NRD|1|LA|C|1923
*
7NRD|1|LA|G|1928
7NRD|1|LA|G|1929
7NRD|1|LA|A|1930
7NRD|1|LA|U|1931
7NRD|1|LA|A|1932
7NRD|1|LA|A|1933
7NRD|1|LA|G|1934
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain Lp
- 60S ribosomal protein L41-B
- Chain Lr
- 60S ribosomal protein L43-A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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