IL_7NRD_083
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 7NRD|1|LA|U|2159, 7NRD|1|LA|U|2175, 7NRD|1|LA|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_083 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1674
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|C|2156
7NRD|1|LA|G|2157
7NRD|1|LA|A|2158
7NRD|1|LA|U|2159
7NRD|1|LA|G|2160
7NRD|1|LA|G|2161
*
7NRD|1|LA|U|2173
7NRD|1|LA|G|2174
7NRD|1|LA|U|2175
7NRD|1|LA|U|2176
7NRD|1|LA|G|2177
7NRD|1|LA|A|2178
7NRD|1|LA|C|2179
7NRD|1|LA|G|2180
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain Lr
- 60S ribosomal protein L43-A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: