IL_7NRD_087

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7NRD|1|LA|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_087 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.29

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7NRD|1|LA|G|2206
7NRD|1|LA|A|2207
7NRD|1|LA|A|2208
7NRD|1|LA|U|2209
7NRD|1|LA|G|2210
*
7NRD|1|LA|C|2235
7NRD|1|LA|G|2236
7NRD|1|LA|C|2237

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sm

Transfer RNA; tRNA