IL_7NRD_090

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7NRD|1|LA|A|2281, 7NRD|1|LA|C|2287, 7NRD|1|LA|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_090 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1589

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7NRD|1|LA|C|2277
7NRD|1|LA|C|2278
7NRD|1|LA|A|2279
7NRD|1|LA|A|2280
7NRD|1|LA|A|2281
7NRD|1|LA|U|2282
7NRD|1|LA|G|2283
7NRD|1|LA|C|2284
7NRD|1|LA|C|2285
7NRD|1|LA|U|2286
7NRD|1|LA|C|2287
7NRD|1|LA|G|2288
*
7NRD|1|LA|C|2304
7NRD|1|LA|G|2305
7NRD|1|LA|C|2306
7NRD|1|LA|G|2307

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lp

60S ribosomal protein L41-B

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sn

Transfer RNA; tRNA