IL_7NRD_105

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_105 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.1464

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7NRD|1|LA|U|2835
7NRD|1|LA|C|2836
7NRD|1|LA|A|2837
7NRD|1|LA|A|2838
7NRD|1|LA|G|2839
*
7NRD|1|LA|C|2849
7NRD|1|LA|G|2850
7NRD|1|LA|A|2851
7NRD|1|LA|C|2852
7NRD|1|LA|A|2853

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LL

60S ribosomal protein L10

Chain Lo

Ubiquitin-60S ribosomal protein L40