IL_7NRD_107

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7NRD|1|LA|G|2945, 7NRD|1|LA|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_107 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.147

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7NRD|1|LA|C|2879
7NRD|1|LA|U|2880
7NRD|1|LA|C|2881
*
7NRD|1|LA|G|2943
7NRD|1|LA|U|2944
7NRD|1|LA|G|2945
7NRD|1|LA|A|2946
7NRD|1|LA|G|2947

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LX

60S ribosomal protein L23-A