IL_7NRD_117

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

7NRD|1|LA|U|3056, 7NRD|1|LA|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_117 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1767

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7NRD|1|LA|U|3054
7NRD|1|LA|U|3055
7NRD|1|LA|U|3056
7NRD|1|LA|U|3057
7NRD|1|LA|U|3058
7NRD|1|LA|G|3059
*
7NRD|1|LA|C|3084
7NRD|1|LA|G|3085
7NRD|1|LA|A|3086
7NRD|1|LA|A|3087
7NRD|1|LA|G|3088

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LY

60S ribosomal protein L24-A

Chain Lf

60S ribosomal protein L31-A