IL_7NRD_119
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 7NRD|1|LA|A|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_119 not in the Motif Atlas
- Homologous match to IL_8C3A_129
- Geometric discrepancy: 0.1535
- The information below is about IL_8C3A_129
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7NRD|1|LA|A|3103
7NRD|1|LA|U|3104
7NRD|1|LA|U|3105
7NRD|1|LA|A|3106
7NRD|1|LA|U|3107
*
7NRD|1|LA|A|3127
7NRD|1|LA|G|3128
7NRD|1|LA|A|3129
7NRD|1|LA|A|3130
7NRD|1|LA|U|3131
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LK
- 60S ribosomal protein L9-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
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