IL_7NRD_124
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 7NRD|1|LA|A|3180, 7NRD|1|LA|A|3186, 7NRD|1|LA|U|3207, 7NRD|1|LA|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_124 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.1764
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|U|3179
7NRD|1|LA|A|3180
7NRD|1|LA|C|3181
7NRD|1|LA|G|3182
7NRD|1|LA|A|3183
7NRD|1|LA|A|3184
7NRD|1|LA|U|3185
7NRD|1|LA|A|3186
7NRD|1|LA|A|3187
7NRD|1|LA|G|3188
*
7NRD|1|LA|C|3204
7NRD|1|LA|G|3205
7NRD|1|LA|C|3206
7NRD|1|LA|U|3207
7NRD|1|LA|G|3208
7NRD|1|LA|A|3209
7NRD|1|LA|A|3210
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LH
- 60S ribosomal protein L6-B
- Chain LK
- 60S ribosomal protein L9-A
- Chain LO
- 60S ribosomal protein L14-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LU
- 60S ribosomal protein L20-A
- Chain Lh
- 60S ribosomal protein L33-A
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