IL_7NRD_127
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CAC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_127 not in the Motif Atlas
- Geometric match to IL_4M4O_002
- Geometric discrepancy: 0.1381
- The information below is about IL_4M4O_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7NRD|1|LA|C|3233
7NRD|1|LA|A|3234
7NRD|1|LA|C|3235
*
7NRD|1|LA|G|3252
7NRD|1|LA|G|3253
7NRD|1|LA|G|3254
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
No other chains within 10ÅColoring options: