IL_7NRD_135
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_135 not in the Motif Atlas
- Geometric match to IL_5TBW_135
- Geometric discrepancy: 0.3221
- The information below is about IL_5TBW_135
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7NRD|1|LA|A|3342
7NRD|1|LA|G|3343
7NRD|1|LA|A|3344
7NRD|1|LA|G|3345
*
7NRD|1|LA|C|3360
7NRD|1|LA|G|3361
7NRD|1|LA|A|3362
7NRD|1|LA|U|3363
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain LW
- 60S ribosomal protein L22-A
- Chain LY
- 60S ribosomal protein L24-A
- Chain SV
- 40S ribosomal protein S8-A
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