IL_7NRD_142
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 7NRD|1|LB|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_142 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.1734
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7NRD|1|LB|A|72
7NRD|1|LB|C|73
7NRD|1|LB|C|74
7NRD|1|LB|G|75
7NRD|1|LB|A|76
7NRD|1|LB|G|77
7NRD|1|LB|U|78
7NRD|1|LB|A|79
7NRD|1|LB|G|80
*
7NRD|1|LB|C|100
7NRD|1|LB|G|101
7NRD|1|LB|A|102
7NRD|1|LB|A|103
7NRD|1|LB|A|104
7NRD|1|LB|C|105
7NRD|1|LB|U|106
Current chains
- Chain LB
- 5S rRNA (121-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- 60S ribosomal protein L10
- Chain LU
- 60S ribosomal protein L20-A
- Chain LV
- 60S ribosomal protein L21-A
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