IL_7NRD_155
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 7NRD|1|S2|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_155 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1938
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NRD|1|S2|G|143
7NRD|1|S2|U|144
7NRD|1|S2|A|145
7NRD|1|S2|U|146
7NRD|1|S2|A|147
7NRD|1|S2|A|148
7NRD|1|S2|C|149
*
7NRD|1|S2|G|165
7NRD|1|S2|C|166
7NRD|1|S2|U|167
7NRD|1|S2|A|168
7NRD|1|S2|A|169
7NRD|1|S2|U|170
7NRD|1|S2|A|171
7NRD|1|S2|C|172
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain ST
- 40S ribosomal protein S6-A
- Chain Sd
- 40S ribosomal protein S24-A
Coloring options: