IL_7NRD_157

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_157 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.2157

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7NRD|1|S2|C|186
7NRD|1|S2|G|187
7NRD|1|S2|A|188
7NRD|1|S2|C|189
*
7NRD|1|S2|G|196
7NRD|1|S2|A|197
7NRD|1|S2|A|198
7NRD|1|S2|G|199

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SV

40S ribosomal protein S8-A