IL_7NRD_173
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_173 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1467
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
7NRD|1|S2|A|550
7NRD|1|S2|G|551
7NRD|1|S2|G|552
7NRD|1|S2|G|553
7NRD|1|S2|C|554
7NRD|1|S2|A|555
7NRD|1|S2|A|556
7NRD|1|S2|G|557
*
7NRD|1|S2|C|587
7NRD|1|S2|U|588
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SR
- 40S ribosomal protein S2
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain Sh
- Multiprotein-bridging factor 1
Coloring options: