IL_7NRD_185
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_185 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.3152
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|S2|G|751
7NRD|1|S2|A|752
7NRD|1|S2|A|753
7NRD|1|S2|A|754
7NRD|1|S2|A|755
7NRD|1|S2|A|756
7NRD|1|S2|A|757
7NRD|1|S2|U|758
7NRD|1|S2|U|759
*
7NRD|1|S2|A|791
7NRD|1|S2|U|792
7NRD|1|S2|A|793
7NRD|1|S2|U|794
7NRD|1|S2|U|795
7NRD|1|S2|A|796
7NRD|1|S2|G|797
7NRD|1|S2|C|798
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain Sb
- 40S ribosomal protein S22-A
Coloring options: