IL_7NRD_195
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 7NRD|1|S2|C|1096, 7NRD|1|S2|U|1098, 7NRD|1|S2|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_195 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1615
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|S2|C|1034
7NRD|1|S2|G|1035
7NRD|1|S2|A|1036
*
7NRD|1|S2|U|1095
7NRD|1|S2|C|1096
7NRD|1|S2|U|1097
7NRD|1|S2|U|1098
7NRD|1|S2|U|1099
7NRD|1|S2|G|1100
7NRD|1|S2|G|1101
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SR
- 40S ribosomal protein S2
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sf
- 40S ribosomal protein S27-A
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