IL_7NRD_196
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_196 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.1643
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7NRD|1|S2|G|1041
7NRD|1|S2|G|1042
7NRD|1|S2|A|1043
7NRD|1|S2|U|1044
*
7NRD|1|S2|G|1074
7NRD|1|S2|C|1075
7NRD|1|S2|A|1076
7NRD|1|S2|C|1077
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SP
- 40S ribosomal protein S0-A
- Chain SQ
- 40S ribosomal protein S1-A
- Chain SY
- 40S ribosomal protein S13
- Chain Se
- 40S ribosomal protein S26-B
Coloring options: