IL_7NRD_198
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_198 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1333
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|G|1111
7NRD|1|S2|G|1112
7NRD|1|S2|A|1113
7NRD|1|S2|G|1114
7NRD|1|S2|U|1115
7NRD|1|S2|A|1116
7NRD|1|S2|U|1117
7NRD|1|S2|G|1118
*
7NRD|1|S2|U|1129
7NRD|1|S2|G|1130
7NRD|1|S2|A|1131
7NRD|1|S2|A|1132
7NRD|1|S2|A|1133
7NRD|1|S2|C|1134
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- 60S ribosomal protein L41-B
- Chain Sc
- 40S ribosomal protein S23-A
Coloring options: