IL_7NRD_208
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 7NRD|1|S2|C|1274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_208 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.3072
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
7NRD|1|S2|G|1271
7NRD|1|S2|U|1272
7NRD|1|S2|G|1273
7NRD|1|S2|C|1274
7NRD|1|S2|A|1275
7NRD|1|S2|U|1276
*
7NRD|1|S2|A|1436
7NRD|1|S2|U|1437
7NRD|1|S2|G|1438
7NRD|1|S2|C|1439
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain S3
- mRNA (32-MER)
- Chain SA
- 40S ribosomal protein S3
- Chain SC
- 40S ribosomal protein S10-A
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- Ubiquitin-40S ribosomal protein S31
- Chain Sh
- Multiprotein-bridging factor 1
- Chain Sn
- Transfer RNA; tRNA
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