IL_7NRD_217
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_217 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.1457
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|S2|G|1480
7NRD|1|S2|C|1481
7NRD|1|S2|C|1482
7NRD|1|S2|A|1483
7NRD|1|S2|G|1484
7NRD|1|S2|C|1485
7NRD|1|S2|G|1486
7NRD|1|S2|A|1487
*
7NRD|1|S2|U|1519
7NRD|1|S2|U|1520
7NRD|1|S2|G|1521
7NRD|1|S2|U|1522
7NRD|1|S2|G|1523
7NRD|1|S2|A|1524
7NRD|1|S2|A|1525
7NRD|1|S2|A|1526
7NRD|1|S2|C|1527
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain SB
- 40S ribosomal protein S5
- Chain SF
- 40S ribosomal protein S16-A
- Chain SI
- 40S ribosomal protein S19-A
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
Coloring options: