IL_7NRD_221
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 7NRD|1|S2|C|1637, 7NRD|1|S2|A|1766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_221 not in the Motif Atlas
- Homologous match to IL_4V88_463
- Geometric discrepancy: 0.1905
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|C|1636
7NRD|1|S2|C|1637
7NRD|1|S2|G|1638
*
7NRD|1|S2|C|1764
7NRD|1|S2|A|1765
7NRD|1|S2|A|1766
7NRD|1|S2|G|1767
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain S3
- mRNA (32-MER)
- Chain SR
- 40S ribosomal protein S2
- Chain Se
- 40S ribosomal protein S26-B
- Chain Sm
- Transfer RNA; tRNA
Coloring options: