IL_7NRD_224
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_224 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2283
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28833.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|S2|C|1644
7NRD|1|S2|G|1645
7NRD|1|S2|C|1646
7NRD|1|S2|U|1647
*
7NRD|1|S2|A|1753
7NRD|1|S2|A|1754
7NRD|1|S2|A|1755
7NRD|1|S2|A|1756
7NRD|1|S2|G|1757
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- 60S ribosomal protein L41-B
- Chain S3
- mRNA (32-MER)
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain Sn
- Transfer RNA; tRNA
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