IL_7NRD_226

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_226 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1782

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7NRD|1|S2|C|1653
7NRD|1|S2|G|1654
7NRD|1|S2|A|1655
7NRD|1|S2|U|1656
*
7NRD|1|S2|A|1744
7NRD|1|S2|G|1745
7NRD|1|S2|A|1746
7NRD|1|S2|G|1747

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain Lp

60S ribosomal protein L41-B

Chain Sc

40S ribosomal protein S23-A