IL_7NRD_242
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_242 not in the Motif Atlas
- Homologous match to IL_8C3A_486
- Geometric discrepancy: 0.1913
- The information below is about IL_8C3A_486
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28976.1
- Basepair signature
- cWW-L-cWW-cSH-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|C|2889
7NRD|1|LA|A|2890
7NRD|1|LA|U|2891
7NRD|1|LA|A|2892
*
7NRD|1|LA|U|2909
7NRD|1|LA|A|2910
7NRD|1|LA|A|2911
7NRD|1|LA|G|2912
7NRD|1|LA|C|2913
7NRD|1|LA|G|2914
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LK
- 60S ribosomal protein L9-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LX
- 60S ribosomal protein L23-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
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