IL_7NRD_247

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_247 not in the Motif Atlas

Geometric match to IL_8C3A_413

Geometric discrepancy: 0.1441

The information below is about IL_8C3A_413

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

7NRD|1|S2|U|822
7NRD|1|S2|G|823
7NRD|1|S2|G|824
*
7NRD|1|S2|C|848
7NRD|1|S2|C|849
7NRD|1|S2|A|850

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain SX

40S ribosomal protein S11-A