IL_7NSI_015

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGCCAG*CGGUCAUAC

Length

16 nucleotides

Bulged bases

7NSI|1|AA|G|256, 7NSI|1|AA|U|257, 7NSI|1|AA|C|258, 7NSI|1|AA|U|260, 7NSI|1|AA|A|261

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSI_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.3908

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7NSI|1|AA|G|241
7NSI|1|AA|U|242
7NSI|1|AA|G|243
7NSI|1|AA|C|244
7NSI|1|AA|C|245
7NSI|1|AA|A|246
7NSI|1|AA|G|247
*
7NSI|1|AA|C|254
7NSI|1|AA|G|255
7NSI|1|AA|G|256
7NSI|1|AA|U|257
7NSI|1|AA|C|258
7NSI|1|AA|A|259
7NSI|1|AA|U|260
7NSI|1|AA|A|261
7NSI|1|AA|C|262

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

28S ribosomal protein S5, mitochondrial isoform X2

Chain AL

Mitoribosomal protein us12m, mrps12

Chain Ai

Mitochondrial ribosomal protein S33